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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaaataaacctgtgctgatgttgtggtgctttatactttctttctttttcgtttgattttgacttgttaaactttcttggtagAGTTGATGTTGCTGGGACTTATATCACTTCTGTTGTCACAAAGCGCGAGATGGATTTCAGAAATCTGTGTTAACTCTTCCCTTTTCAATAGTAAATTCTA

Basic information

species Arabidopsis thaliana
transcript AT1G11000.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875228|gb|AU236059.1|AU236059
EST:     GAAGACTAGAAGAAAGGCACTTTTTACTTCACTTGAGAAAATGAAAGAGG                         AGTTGATGTTGCTGGGACTTATATCACTTCTGTTGTCACAAAGCGCGAGAT
genomic: GAAGACTAGAAGAAAGGCACTTTTTACTTCACTTGAGAAAATGAAAGAGGgtatgtcaaa ... ttcttggtagAGTTGATGTTGCTGGGACTTATATCACTTCTGTTGTCACAAAGCGCGAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttatactttctttctttttcgtttgattttgacttgttaaactttcttggtagAGTTGATGTTGCTGGGACTTATATCACTTCTGTTGTCACAAAGCGCGAGATGGATTTCAGAAATCTGTGTTAACTCTTCCCTTTTCAATAGTAAATTCTA
                            ttttgac  putative branch site (score: 3)
                                           ctttctt  putative PPT
            tttcttttt  TA-rich tract