1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttccactaccgatcaaactctcttttcagctaaaaatttagtttccgtttctgagtgaccaatggttgcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTCTCTTCTAAG
species | Arabidopsis thaliana |
transcript | AT1G09340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGEST: gi|124906833|gb|EH980913.1|EH980913
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGG
EST: TTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGG-TAAATCTCCCTATTGCCAAACAATTGCCCGGEST: gi|164154146|gb|ES092173.1|ES092173
genomic: TTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCC-TATTGCCAAACAATTGCCCGG
EST: TTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTEST: gi|125288413|gb|EL302498.1|EL302498
genomic: TTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGT
EST: TTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTEST: gi|125201788|gb|EL216742.1|EL216742
genomic: TTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGT
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAAEST: gi|124812323|gb|EH897189.1|EH897189
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAA
EST: TCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTEST: gi|124717278|gb|EH808680.1|EH808680
genomic: TCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGT
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCCTCTTATTGCCAAACAATTGCCCGGEST: gi|124751868|gb|EH841998.1|EH841998
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATC-TCCTATTGCCAAACAATTGCCCGG
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCTCTTATTGCCAAACAATTGCCCGGTEST: gi|124953491|gb|EL028669.1|EL028669
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGT
EST: TTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGG-CNTCAG GTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTEST: gi|116412032|gb|EG454624.1|EG454624
genomic: TTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGT
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTEST: gi|125051166|gb|EL123435.1|EL123435
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGT
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCTCCTEST: gi|124785698|gb|EH875377.1|EH875377
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCT
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATEST: gi|125280704|gb|EL294789.1|EL294789
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAAT
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGEST: gi|116412031|gb|EG454623.1|EG454623
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGG
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTEST: gi|125283666|gb|EL297751.1|EL297751
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGT
EST: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAG GTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAA
genomic: GATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgttccactac ... gcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAA
ttttcagctaaaaatttagtttccgtttctgagtgaccaatggttgcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTCTCTTCTAAG
agctaaa putative branch site (score: 3)
ttgctttt putative PPT
taaaaatttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccactaccgatcaaactctcttttcagctaaaaatttagtttccgtttctgagtgaccaatggttgcttttgcagGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTCTCTTCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT