1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttccttgaatctttgccacagtagttcagacattttaccatcaaatttttttttgtgtaatgatggaattaggatttgatctattatccgtgctttctagATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCGATCTGGACTCTCAGAGGAAGGGAAAGTGTGTCGTTCTAAAAACATCAA
species | Arabidopsis thaliana |
transcript | AT1G09100.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATTAAGCTTAACAAACAGCTTCCTTACTTAGTTGGCAATATCGTTGAG ATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCEST: gi|125113155|gb|EL164067.1|EL164067
genomic: AGATTAAGCTTAACAAACAGCTTCCTTACTTAGTTGGCAATATCGTTGAGgtactttcac ... tgctttctagATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATC
EST: TACTTAGTTGGCAATATCGTTGAG ATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCEST: gi|124952420|gb|EL027693.1|EL027693
genomic: TACTTAGTTGGCAATATCGTTGAGgtactttcac ... tgctttctagATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATC
EST: CAATATCGTTGAG ATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCEST: gi|86061012|gb|DR356769.1|DR356769
genomic: CAATATCGTTGAGgtactttcac ... tgctttctagATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATC
EST: AGATTAAGCTTAACAAACAGCTTCCTTACTTAGTTGGCAATATCGTTGAG ATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATC
genomic: AGATTAAGCTTAACAAACAGCTTCCTTACTTAGTTGGCAATATCGTTGAGgtactttcac ... tgctttctagATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATC
tttttttttgtgtaatgatggaattaggatttgatctattatccgtgctttctagATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCGATCTGGACTCTCAGAGGAAGGGAAAGTGTGTCGTTCTAAAAACATCAA
atttgat putative branch site (score: 5)
tgctttct putative PPT
atttgatctattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccttgaatctttgccacagtagttcagacattttaccatcaaatttttttttgtgtaatgatggaattaggatttgatctattatccgtgctttctagATTCTTGAGATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCGATCTGGACTCTCAGAGGAAGGGAAAGTGTGTCGTTCTAAAAACATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - catcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatttga