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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtctccaatttttcttggtttctgattgtatagttgtagtaacacatgatgaatattctctttgtactaattaaacaatactattaataaatgaaacagTAACCAAGATGGATCGTCCAGTTTCGATTTTGGAGAGCTAGAAGAAGCAATTGTTCTGCAAGGTGTCAAGTATAGGAACGAGGAAGCCAAGCCAC

Basic information

species Arabidopsis thaliana
transcript AT1G08320.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08320.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv06s0080g00360.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------------------------------------ggtctcc-----aatttttcttggtttctgattgtatagttgtagtaacacatgatgaatattctctttgtactaattaaacaatactattaataaatgaaacagTAACCAAGATGGATCGTCCAGTTTCGATTTTGGAGAGCTAGAAGAAGCAATTGTTCTGCAAGGTGTCAAGTATAGGAACGAGGAAGCCAAGCCAC
                                                       | | |     ||||  |    ||| || ||| | |  |    ||||    |||   | ||| || | ||     ||      | |  ||   || |    ||| || ||||| |||||  ||   || |||||||| ||||| |||||||||||||| ||||||||||| |||  ||| || || ||||| ||  |  
gtacggtaacccaaaatccttgctaatcttctcattttctccgcataatacagaattttctgggtaattgctacatgttgcttattttcttctctgggtaagttctgacatagattatcatggtttc--ttttgtttttcctttttgaattttcccagCAATCAAGAAGGATCTGCC---TTTGATTTTGGGGAGCTGGAAGAAGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgatgaatattctctttgtactaattaaacaatactattaataaatgaaacagTAACCAAGATGGATCGTCCAGTTTCGATTTTGGAGAGCTAGAAGAAGCAATTGTTCTGCAAGGTGTCAAGTATAGGAACGAGGAAGCCAAGCCAC
                tttgtactaattaaac  TA-rich tract