Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgtaagaaagctgatcactcttcgtaaattggtttattctgaaactaatttggaaatctccatcttttatagTTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAG

Basic information

species Arabidopsis thaliana
transcript AT1G06690.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057249|gb|DR353006.1|DR353006
EST:     TTGACAATGGTATTGATTTTTTCGACACCGCTGAAGTTTATGGTTCCAAG                         TTTTCCCTGGGTGCTATAAGCTCTGAAACTC
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCTGAAACTC
EST: gi|116456052|gb|EG498644.1|EG498644
EST:     TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG                         TTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAG
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAG
EST: gi|116456053|gb|EG498645.1|EG498645
EST:     TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG                         TTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAG
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAG
EST: gi|124770834|gb|EH860964.1|EH860964
EST:     TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG                         TTTTCCCTGGGTGCTATAAGCTCT
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCT
EST: gi|124913785|gb|EH987659.1|EH987659
EST:     TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG                         TTTTCCCTGGGTGCTATAAGCTCTGA
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttcgtaaattggtttattctgaaactaatttggaaatctccatcttttatagTTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAG
                         aactaat  putative branch site (score: 2)
                                       tctccatcttttat  putative PPT
       taaattggtttatt  TA-rich tract