1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatatatttgactaaatgccgtgtgtctgtgactttccattgatcctctttattgctggttgcttattgtgtgttgttgtttgatgcagGTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAAGGTTCACTCGGGGAATAAGAAATTTGAAAGCGGTGTTTCACTTGAAGTAATAG
species | Arabidopsis thaliana |
transcript | AT1G06430.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGACATTCTTGACTCCGCTTTGCTAAGACCATGGCGTTTTGACCGGCAG GTATCTGTTGACGTTCCEST: gi|125264799|gb|EL278884.1|EL278884
genomic: CAGACATTCTTGACTCCGCTTTGCTAAGACCAGGGCGTTTTGACCGGCAGgtatatattt ... tttgatgcagGTATCTGTTGACGTTCC
EST: CAGACATTCTTGACTCCGCTTTGCTAAGACCAGGGCGTTTTGACCGGCAG GTATCTGTTAACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAAEST: gi|86070337|gb|DR366094.1|DR366094
genomic: CAGACATTCTTGACTCCGCTTTGCTAAGACCAGGGCGTTTTGACCGGCAGgtatatattt ... tttgatgcagGTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAA
EST: CANACATTCTTGACTCCGCTTTGCTAAGACCAGGGCGTTTTGACCGGCAG GTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAAGGTT
genomic: CAGACATTCTTGACTCCGCTTTGCTAAGACCAGGGCGTTTTGACCGGCAGgtatatattt ... tttgatgcagGTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAAGGTT
ttccattgatcctctttattgctggttgcttattgtgtgttgttgtttgatgcagGTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAAGGTTCACTCGGGGAATAAGAAATTTGAAAGCGGTGTTTCACTTGAAGTAATAG
tctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatttgactaaatgccgtgtgtctgtgactttccattgatcctctttattgctggttgcttattgtgtgttgttgtttgatgcagGTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAAGGTTCACTCGGGGAATAAGAAATTTGAAAGCGGTGTTTCACTTGAAGTAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG