Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgtacaagtcatcttttgttctgctgttaaatgagtgcttatgcaattatgtgattatatgttttgattgattgttcacttattcagAAATAATACATTTTATACTGGAGAGGAAGGCGTTGAAGGCTTTTGAACTAACTGAACAACTAGCACAAGACTTGCTTGAGAAAAACAAGGATTTGCAATT

Basic information

species Arabidopsis thaliana
transcript AT1G06060.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055099|gb|DR350856.1|DR350856
EST:     TGGAGTTAAGCAGCCTGCAATTGATCGTGATAACATGGAGAGAAGAAAAC                         AAATAATACATTTTATACTGGAGAGGAAGGCGTTGAAGGCTTTTGAACTAA
genomic: TGGAGTTAAGCAGCCTGCAATTGATCGTGATAACATGGAGAGAAGAAAACgtgagttgta ... acttattcagAAATAATACATTTTATACTGGAGAGGAAGGCGTTGAAGGCTTTTGAACTAA
EST: gi|19874597|gb|AU235428.1|AU235428
EST:     TGGAGTTAAGCAGCCTGCAATTGATCGTGATAACATGGAGAGAAGAAAAC                         AAATAATACATTTTATACTGGAGAGGAAGGCGTTGAAGGCTTTTGAACTAA
genomic: TGGAGTTAAGCAGCCTGCAATTGATCGTGATAACATGGAGAGAAGAAAACgtgagttgta ... acttattcagAAATAATACATTTTATACTGGAGAGGAAGGCGTTGAAGGCTTTTGAACTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgcttatgcaattatgtgattatatgttttgattgattgttcacttattcagAAATAATACATTTTATACTGGAGAGGAAGGCGTTGAAGGCTTTTGAACTAACTGAACAACTAGCACAAGACTTGCTTGAGAAAAACAAGGATTTGCAATT
                                 gattgat  putative branch site (score: 4)
                                          ttcactt  putative PPT
            aattatgtgattatat  TA-rich tract