1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgcatttcaagaatcatgattttggtttgttttcactttgaagaatctatatcgtagtaatgcaacaatgcatagaactgtgtctgagagtctgataaaccttacttggtcattgaaatatgattctctttgcagCTTTTGCTTGGTTACTTGCCACCTGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAAGGATGAGCTTCTGACGA
species | Arabidopsis thaliana |
transcript | AT1G04830.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTACAAAGTTTGCCGGATTCTCCCGGGATCCGTTCTACTGTCTGGAAG CTTTTGCTTGGTTACTTGCCACCTGAACGTTCACTCTGGTCAACTGAGTTGEST: gi|19876213|gb|AU237044.1|AU237044
genomic: CTTTACAAAGTTTGCCGGATTCTCCCGGGATCCGTTCTACTGTCTGGAAGgtatgcattt ... ctctttgcagCTTTTGCTTGGTTACTTGCCACCTGAACGTTCACTCTGGTCAACTGAGTTG
EST: CTTTACAAAGTTTGCCGGATTCTCCCGGGATCCGTTCTACTGTCTGGAAG CTTTTGCTTGGNTACTTGCCACCTGAACGTTCACTCTGGTCAACNTGAGTGEST: gi|86072103|gb|DR367860.1|DR367860
genomic: CTTTACAAAGTTTGCCGGATTCTCCCGGGATCCGTTCTACTGTCTGGAAGgtatgcattt ... ctctttgcagCTTTTGCTTGGTTACTTGCCACCTGAACGTTCACTCTGGTCAAC-TGAGTT
EST: CTTTANNNAGTTTGCCGGATTCTCCCGGGATCCGTTCTACTGTCTGGAAG CTTTTGCTTGGTTACTTGCCACCTGAACGTTCACTCTGGGTCA-CTGAGTT
genomic: CTTTACAAAGTTTGCCGGATTCTCCCGGGATCCGTTCTACTGTCTGGAAGgtatgcattt ... ctctttgcagCTTTTGCTTGGTTACTTGCCACCTGAACGTTCACTCTGG-TCAACTGAGTT
tgtctgagagtctgataaaccttacttggtcattgaaatatgattctctttgcagCTTTTGCTTGGTTACTTGCCACCTGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAAGGATGAGCTTCTGACGA
accttac putative branch site (score: 3)
ttctctttgc putative PPT
attgaaatatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatttcaagaatcatgattttggtttgttttcactttgaagaatctatatcgtagtaatgcaacaatgcatagaactgtgtctgagagtctgataaaccttacttggtcattgaaatatgattctctttgcagCTTTTGCTTGGTTACTTGCCACCTGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAAGGATGAGCTTCTGACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT