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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgtttgatacactttttttatcttctggtctcttttttcgatttttatgtgataatgtttgatcaaagctttaattatagcttttggttgagaaagttcgattagttcttacttactaagaacggtaagacctaacctgaatgtatttgctttgcaacagCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTACCTACCGTTAACAAG

Basic information

species Arabidopsis thaliana
transcript AT1G03040.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116436446|gb|EG479038.1|EG479038
EST:     AGCATCGCTGAGAGG                         CTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTA
genomic: AGCATCGCTGAGAGGgtaagatgtt ... tttgcaacagCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTA
EST: gi|164178922|gb|ES028987.1|ES028987
EST:     GCATCGCTGAGAGG                         CTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTG
genomic: GCATCGCTGAGAGGgtaagatgtt ... tttgcaacagCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTG
EST: gi|116436445|gb|EG479037.1|EG479037
EST:     AGCATCGCTGAGAGG                         CTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTA
genomic: AGCATCGCTGAGAGGgtaagatgtt ... tttgcaacagCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttacttactaagaacggtaagacctaacctgaatgtatttgctttgcaacagCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTACCTACCGTTAACAAG
                                        tttgcttt  CT-rich tract
                                  aatgtattt  TA-rich tract