1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttttttactttgctctaaattctctcctcgaaaaaaaaaaacaagactttgggaaacagagtggtttaacgttagcgtgttcatagGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTG
species | Arabidopsis thaliana |
transcript | AT1G02800.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAG GTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGEST: gi|86059423|gb|DR355180.1|DR355180
genomic: CTGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGgttttttact ... gtgttcatagGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATG
EST: CTGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAG GTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGEST: gi|164174689|gb|ES055120.1|ES055120
genomic: CTGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGgttttttact ... gtgttcatagGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATG
EST: TGATACCATTTATGTTCAG GTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATG
genomic: TGATACCATTTATGTTCAGgttttttact ... gtgttcatagGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATG
aaaaaaaaaacaagactttgggaaacagagtggtttaacgttagcgtgttcatagGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTG
gtttaac putative branch site (score: 3)
aaaaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttactttgctctaaattctctcctcgaaaaaaaaaaacaagactttgggaaacagagtggtttaacgttagcgtgttcatagGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC