Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgatttataaatctcttaacatggcgtttagggtttgattgttttgtgggttttagtttttgcttattgtggttggttgaattttttgtagAGCGAAATCCTCCAATCAATGAAGTTGTTCAATCTGGTGTTGTTCCTCACATTGTGCAATTTCTTTCCAGGGATGACTTCACTCAACTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G02690.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02690.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 3'ss of exon 2
---gtacgtgatttataaatctcttaacatggcgtttagggtttgattgttttgtgggttttagt--ttttgcttattgtggttggttgaattttttgtagAGCGAAATCCTCCAATCAATGAAGTTGTTCAATCTGGTGTTGTTCCTCACATTGTGCAATTTCTTTCCAGGGATGACTTCACTCAACTTCAG
   | |  ||  ||  ||     |  |  |  | |||    |||| || | ||   |   || ||   |||||||  |     |  ||   ||  |   ||| || | ||||||||||||||||||| | ||||||||||||||||||| | | ||  | || |||  ||||||||||||| | || ||||||
gttggatttgtctttcaagaagttataattctccttttaactttggttatctttgagcgattggtagctttgctttctcactctaattttgttcatc--agAACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgttttgtgggttttagtttttgcttattgtggttggttgaattttttgtagAGCGAAATCCTCCAATCAATGAAGTTGTTCAATCTGGTGTTGTTCCTCACATTGTGCAATTTCTTTCCAGGGATGACTTCACTCAACTTCAG
 gtttgat  putative branch site (score: 5)
                                             ttttttgt  putative PPT
                                        ttgaattttttgta  TA-rich tract