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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatctcatagccaatattttaaaccattccctgagataaaatcagtaaaatttgaatatatatatgtaaaaatgtgcagGTGGAGGTTGACCTTGTGACAGGAAAAACAGAATTTATAAGATCAGATATTATCTATGACTGTGGTAAAAGCCTTAATCCTGCTATTGATTTAGGACAG

Basic information

species Arabidopsis thaliana
transcript AT1G02590.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02590.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv18s0041g02390.t01 (Vitis vinifera), 3'ss of exon 6
---------------------------------------------------------gtgaatctcatagccaatattttaa---accat----tccctgagataaaatcagtaaaatttgaatatatatatgtaa----aaatgt-gcagGTGGAGGTTGACCTTGTGACAGGAAAAACAGAATTTATAAGATCAGATATTATCTATGACTGTGGTAAAAGCCTTAATCCTGCTATTGATTTAGGACAG
                                                           | ||     ||  ||  ||  |    || ||    ||| ||    || ||     || ||| | ||||   || |||       |||  |||||||| ||  | ||| | || ||| ||||   | || |   ||| |||||||| |||||||||||  ||||||| || |||||| | ||||||||||||
gcaagtttttcaagattaccttaatcgctttcattagtgcttttgttaaaattaaattagtattcttcaggtaaacttggaggagactatagcttccatgcttaaacatgctccaagttttactatactaatttaactttgggtgtcacagGTGGAAGTAAATCTTCTCACTGGAGAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGGCAAAGCCTCAACCCTGCTGTGGATTTAGGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattccctgagataaaatcagtaaaatttgaatatatatatgtaaaaatgtgcagGTGGAGGTTGACCTTGTGACAGGAAAAACAGAATTTATAAGATCAGATATTATCTATGACTGTGGTAAAAGCCTTAATCCTGCTATTGATTTAGGACAG
           ataaaatcagtaaaat  TA-rich tract