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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtattgttcttaccatttcttgctgggtttttttccggggaatatgtatggaaagttgatattgaattctgattcagctctggaaattttcagAAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTCTTCAGGACCCTCTCCTGGGCCCTGAGTGTCAGAAAATGTTCGAACAAGG

Basic information

species Arabidopsis thaliana
transcript AT1G01920.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069207|gb|DR364964.1|DR364964
EST:     CCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATG                         AAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTC
genomic: CCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATGgtatagtatt ... aaattttcagAAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTC
EST: gi|86069206|gb|DR364963.1|DR364963
EST:     CCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATG                         AAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTC
genomic: CCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATGgtatagtatt ... aaattttcagAAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTC
EST: gi|19874501|gb|AU235332.1|AU235332
EST:     CCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATG                         AAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTC
genomic: CCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATGgtatagtatt ... aaattttcagAAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTC
EST: gi|86069205|gb|DR364962.1|DR364962
EST:     CCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATG                         AAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTC
genomic: CCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATGgtatagtatt ... aaattttcagAAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatatgtatggaaagttgatattgaattctgattcagctctggaaattttcagAAGTTTTGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTCTTCAGGACCCTCTCCTGGGCCCTGAGTGTCAGAAAATGTTCGAACAAGG
                            ttctgat  putative branch site (score: 3)
                                                ttttc  putative PPT
                    atattgaatt  TA-rich tract