1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatataattcagactccgaaaggaaaaaaatggttctgtgattatgcttagtggttttattgtaaatctagttaaatggtgttcttcttgtgttgtgcagTTTGTAAATGATCTTCATGCTCTCATTAGCCCTGTTCCCAAAGGGACTCCACTCCCGCTTGTTCTGCTCGGAAAG
species | Arabidopsis thaliana |
transcript | AT1G01820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGTCGACAAGAACACCAGCTTGGCTAGGAAAGTTTTCCGTCTCTTCAAG TTTGTAAATGATCTTCATGCTCTCATTAGCCCTGTTCCCAAAGGGACTCCAEST: gi|124987789|gb|EL060223.1|EL060223
genomic: ATGTCGACAAGAACACCAGCTTGGCTAGGAAAGTTTTCCGTCTCTTCAAGgttggtttct ... tgttgtgcagTTTGTAAATGATCTTCATGCTCTCATTAGCCCTGTTCCCAAAGGGACTCCA
EST: ATGTCGACAAGAACACCAGCTTGGCTAGGAAAGTTTTCCGTCTCTTCAAG TTTGTAAATGATCTTCATG
genomic: ATGTCGACAAGAACACCAGCTTGGCTAGGAAAGTTTTCCGTCTCTTCAAGgttggtttct ... tgttgtgcagTTTGTAAATGATCTTCATG
gcttagtggttttattgtaaatctagttaaatggtgttcttcttgtgttgtgcagTTTGTAAATGATCTTCATGCTCTCATTAGCCCTGTTCCCAAAGGGACTCCACTCCCGCTTGTTCTGCTCGGAAAG
ttcttcttgt CT-rich tract
ttttattgtaaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatataattcagactccgaaaggaaaaaaatggttctgtgattatgcttagtggttttattgtaaatctagttaaatggtgttcttcttgtgttgtgcagTTTGTAAATGATCTTCATGCTCTCATTAGCCCTGTTCCCAAAGGGACTCCACTCCCGCTTGTTCTGCTCGGAAAG
- - - - - - - -ccgaaag
- - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ggtttta