1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgtattataaaatctctgacatcgaatctctctatctttcaaatcatcatgatcataacaagtctctttcttttctcagGAAAAACTGAGAAGCCAGAGCTG
species | Arabidopsis thaliana |
transcript | AT1G01780.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGCAACTCTTCAAGGAATCTGGCAATTTCAGCAAAAACTTTCAACCAG GAAAAACTGAGAAGCCAGAGCTGEST: gi|164133387|gb|ES128298.1|ES128298
genomic: TGAGCAACTCTTCAAGGAATCTGGCAATTTCAGCAAAAACTTTCAACCAGgttcgtatta ... cttttctcagGAAAAACTGAGAAGCCAGAGCTG
EST: TTTCAGCAAAAACTTTCAACCAG G-AAAACTGAGAAGCCAGAGCTG
genomic: TTTCAGCAAAAACTTTCAACCAGgttcgtatta ... cttttctcagGAAAAACTGAGAAGCCAGAGCTG
aatctctctatctttcaaatcatcatgatcataacaagtctctttcttttctcagGAAAAACTGAGAAGCCAGAGCTG
tcataac putative branch site (score: 2)
tctctttcttttctc putative PPT
tttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtattataaaatctctgacatcgaatctctctatctttcaaatcatcatgatcataacaagtctctttcttttctcagGAAAAACTGAGAAGCCAGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT