Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|301501784|gb|HO207324.1|HO207324EST: GTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGG CTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAG
genomic: GTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGGgtatggaatc ... ttttgcccagCTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAG
EST:
gi|125073546|gb|EL137838.1|EL137838EST: AAGAATAGTCTCAGG CTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAG
genomic: AAGAATAGTCTCAGGgtatggaatc ... ttttgcccagCTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAG
EST:
gi|301502474|gb|HO208014.1|HO208014EST: GTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGG CTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAG
genomic: GTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGGgtatggaatc ... ttttgcccagCTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAG
EST:
gi|301501314|gb|HO206854.1|HO206854EST: GTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGG CTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAG
genomic: GTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGGgtatggaatc ... ttttgcccagCTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAG
EST:
gi|116443557|gb|EG486149.1|EG486149EST: GTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGG CTGGATGATTGGGTTCTCTGCCGGATTTAC
genomic: GTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGGgtatggaatc ... ttttgcccagCTGGATGATTGGGTTCTCTGCCGGATTTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caatctcttgttctgtttctggtaaattgaatcaacggtgttgatttttgcccagCTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAGAGGCGGGGACCACCGCCTCCGGTTGTTTACGGCGACGAAATCATGGAGG
tgttgat putative branch site (score: 4)
tttttgccc CT-rich tract
taaattgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggaatcagatctgattcacatctttgtttcaatctcttgttctgtttctggtaaattgaatcaacggtgttgatttttgcccagCTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAGAGGCGGGGACCACCGCCTCCGGTTGTTTACGGCGACGAAATCATGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG