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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacagatgatttacattttgcttttatattaatgtcacagttctagtctcaagacattactatatttagatatgatatgataacactggatcatgatacgactgaataaatctgtttttgttctagGCGGCAAGATCAAAGGTCTTCAGGAACATGTTAGATTCTGATGAATGCAAGACCTCCCCCGAGGAATCAATCACTCTCCCTGATTTGTCCCACGACGAAC

Basic information

species Arabidopsis thaliana
transcript AT1G01640.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878741|gb|AU239572.1|AU239572
EST:     TTAAACCTGGTGAAGAAGCTCCACCCATACCTACCCACAAAGCCGTTCTG                         GCGGCAAGATCAAAGGTCTTCAGGAACATGTTAGATTCTGATGAATGCAAG
genomic: TTAAACCTGGTGAAGAAGCTCCACCCATACCTACCCACAAAGCCGTTCTGgtaacagatg ... tttgttctagGCGGCAAGATCAAAGGTCTTCAGGAACATGTTAGATTCTGATGAATGCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatatgataacactggatcatgatacgactgaataaatctgtttttgttctagGCGGCAAGATCAAAGGTCTTCAGGAACATGTTAGATTCTGATGAATGCAAGACCTCCCCCGAGGAATCAATCACTCTCCCTGATTTGTCCCACGACGAAC
      tgataac  putative branch site (score: 2)
                                       tctgtttttgttct  putative PPT
                                 aataaatctgttttt  TA-rich tract