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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaatatatgtacataatatgtatcttcaagctaataccaaggaaacaatttctgattggttcttgctggactactctttgattgcagGATTCAGGTTTCTAAAAAGACTGATTCTTGTTCATGGGAGGTATTCATATAACCGGACAGCATTTTTGTCCCAGTATTCCTTCTACAAATCGTTGTTGAT

Basic information

species Arabidopsis thaliana
transcript AT5G44240.2
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44240.2 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: LOC_Os11g25980.2 (Oryza sativa), 3'ss of exon 20
-gtaaggaatatatgtac--ataatatg--tatcttcaagctaataccaaggaaacaatttctgattggttcttgctggactactctttgatt---gcagGATTCAGGTTTCTAAAAAGACTGATTCTTGTTCATGGGAGGTATTCATATAACCGGACAGCATTTTTGTCCCAGTATTCCTTCTACAAATCGTTGTTGAT
  |   || | |||   |  ||| | ||  ||| |    | | ||||   | ||  ||  |    |  ||||||      ||  | ||   |    ||||  ||||| ||| | ||||| ||||||||||| |||||| | || ||||| ||||| ||||| ||| | || |||||||| |||||||| || ||||| ||
tattttgactttattctctgatattttgactatgtattggttcatacactgtaactaagattatttatgttcttatgcttctgtttttctgtcttggcagAGTTCAGATTTTTGAAAAGGCTGATTCTTGTCCATGGGCGATACTCATACAACCGTACAGCTTTTCTTTCTCAGTATTCTTTCTACAAGTCATTGTTAAT

upper sequence: AT5G44240.2 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GRMZM2G037335_T01 (Zea mays), 3'ss of exon 6
---gtaaggaatatatgta-cataatatgt-atcttcaagctaataccaaggaaacaatttctgattggttcttgctggacta---ctctttgattgcagGATTCAGGTTTCTAAAAAGACTGATTCTTGTTCATGGGAGGTATTCATATAACCGGACAGCATTTTTGTCCCAGTATTCCTTCTACAAATCGTTGTTGAT
     |  |  |     || | |  ||| | ||   |    |   ||        ||| ||   ||    |  |  || | ||   || |||  ||||||  |||| |||||| || ||| |||| ||| |||||||| | |||||||| || || ||||||||| | || ||||| ||||||||||| ||  |  | ||
gttaaattggttgcggttatcctgttattttattaccctttttgcacttcacctccaaatttcaatatacttattatgtattattcctttttttttgcagAGTTCAAGTTTCTTAAGAGATTGATACTTATTCATGGGCGTTATTCATACAATCGAACAGCATTTATTTCACAGTACTCCTTCTACAAGTCACTTCTTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataccaaggaaacaatttctgattggttcttgctggactactctttgattgcagGATTCAGGTTTCTAAAAAGACTGATTCTTGTTCATGGGAGGTATTCATATAACCGGACAGCATTTTTGTCCCAGTATTCCTTCTACAAATCGTTGTTGAT
                                      ctactcttt  CT-rich tract
          aaacaattt  TA-rich tract