1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtgctaattatcccctgttattttttatgtcgtattctctttctttttttgcttacaaactgataaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCACAAGCAAG
species | Arabidopsis thaliana |
transcript | AT5G13940.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116481915|gb|EG524507.1|EG524507
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116481924|gb|EG524516.1|EG524516
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAEST: gi|116480243|gb|EG522835.1|EG522835
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAA
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116481923|gb|EG524515.1|EG524515
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116480191|gb|EG522783.1|EG522783
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116481912|gb|EG524504.1|EG524504
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116481910|gb|EG524502.1|EG524502
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116481918|gb|EG524510.1|EG524510
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116481916|gb|EG524508.1|EG524508
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116481922|gb|EG524514.1|EG524514
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCEST: gi|116480168|gb|EG522760.1|EG522760
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
EST: GTGGAAGAGGTACTTTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAG GTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
genomic: GTGGAAGAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGgtgctaatta ... taaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCC
tattttttatgtcgtattctctttctttttttgcttacaaactgataaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCACAAGCAAG
tttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctaattatcccctgttattttttatgtcgtattctctttctttttttgcttacaaactgataaaatgtagGTTAAAGAGGTCATCATTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCACAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG