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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatgcctcatcagttttgcttctcagcatagtgattcctccttcttttctctcttgtttgctcattgtacagttttgcgcagAGATACATAAATCTGGCTGGTTCGCTGGAAGGCTTGTCTCCAAAAGTTCCATTATACAAAATCACTGAGGGAAATGAACCGTGCTTCTTCACCACTTATT

Basic information

species Arabidopsis thaliana
transcript AT3G57410.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124948897|gb|EL024593.1|EL024593
EST:     GTCAATGTGTGGACCCTAAGGAAAAACAAACTACCTTTGAGATTGGCCAA                         AGATACATAAATCTGG
genomic: GTCAATGTGTGGACCCTAAGGAAAAACAAACTGCCTTTGAGATTGGCCAAgtaatatgcc ... ttttgcgcagAGATACATAAATCTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtgattcctccttcttttctctcttgtttgctcattgtacagttttgcgcagAGATACATAAATCTGGCTGGTTCGCTGGAAGGCTTGTCTCCAAAAGTTCCATTATACAAAATCACTGAGGGAAATGAACCGTGCTTCTTCACCACTTATT
              ttctttt  TA-rich tract