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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcatcatttttaagttattaagcatagtacggaattatcaatcatgtgtaacttttcctacttaacgagaaaaccatactttatcgttttgcagCATATCAAATCTAGGAATGTATCCTGTGGATAATTTCTGCGCAATCATTAACCCCCCTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G52200.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52200.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA20G33080.1 (Glycine max), 3'ss of exon 19
--gtattcatcatttttaa-gttattaagcatagtacggaattatcaatcatgt-------gtaacttttcctacttaacgagaaa----accatactttat-------cgttttgcagCATATCAAATCTAGGAATGTATCCTGTGGATAATTTCTGCGCAATCATTAACCCCCCTCAG
  |  || |  | || ||  || ||  | | | | |       ||  ||||| |       | ||  ||| ||     |  || ||     |    ||||         | |  |||||||| |||||  ||||||||| |||||||||||| || || || || || ||||||||||||
gtgagtttactacttatactgtcatgcaaccttggaattccccatatatcatatttcttgagcaatatttactgtgccaaaagtaataattctgagctttgcgcaatgccttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAACCCCCCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083714|gb|DR379473.1|DR379473
EST:     GCTCGATCTGGAAAGCTTGCTCCTCATGAGTTTCAAGGAGGGACATTCAG                         CATATCAAATCTAGGAATGTATCCTGTGGATAATTTCTGCGCAATCATTAA
genomic: GCTCGATCTGGAAAGCTTGCTCCTCATGAGTTTCAAGGAGGGACATTCAGgtattcatca ... cgttttgcagCATATCAAATCTAGGAATGTATCCTGTGGATAATTTCTGCGCAATCATTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcatgtgtaacttttcctacttaacgagaaaaccatactttatcgttttgcagCATATCAAATCTAGGAATGTATCCTGTGGATAATTTCTGCGCAATCATTAACCCCCCTCAG
                    acttaac  putative branch site (score: 3)
                                       ctttatc  putative PPT
                                    atactttat  TA-rich tract