Sequence
atgc intronic sequence ATGC exonic sequencegtaagttttctttcttctttatatccagtctgttaattgtttcgatatcacacacacatagatatactcgagcatgatgatgatgtatctttgttgaaccgaataacagATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTCACTGATATACATGAGACCGCTCGCGATATGGGGAATGCAATGGGCATTA
Basic information
species | Arabidopsis thaliana |
transcript | AT3G24180.2 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G24180.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: LOC_Os10g33420.1 (Oryza sativa), 3'ss of exon 16
gtaagttttctttcttctttatatccagtctgttaattgtttcgatatcacacacacatagatatactcgagcatgatgatgatgtatctttgttgaaccgaataacagATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTCACTGATATACATGAGACCGCTCGCGATATGGGGAATGCAATGGGCATTA
||| || | || | | | || | | | || ||| | | || || ||| | | || | | | | ||| ||||||||||| ||||||||||| ||||| || || ||||| ||| |||| || || |||||| | || ||||| || |||| |||||||||||||
-----tttcattaaaaatactaattagatattgttgatgctctcttgtttcaaccacc---gtttgctttgtgatatagataacatggggtttcttg-ctgtgttgcagGTATTGGTTCCAAACACCGGAAGGCTGGACCATAGACGGGCACTACAGGTCGCTCATCTACATGCGGCCTCTCGCCATTTGGGCAATGCAATGGGCACGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164208962|gb|ES033117.1|ES033117EST: ACCACTGCTGAGGGAATTTTCACAGCTGGCTGGTCAGAAGAAGGTTTCGG ATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTC
genomic: ACCACTGCTGAGGGAATTTTCACAGCTGGCTGGTCAGAAGAAGGTTTCGGgtaagttttc ... cgaataacagATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacatagatatactcgagcatgatgatgatgtatctttgttgaaccgaataacagATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTCACTGATATACATGAGACCGCTCGCGATATGGGGAATGCAATGGGCATTA
agatata TA-rich tract