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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttctttcttctttatatccagtctgttaattgtttcgatatcacacacacatagatatactcgagcatgatgatgatgtatctttgttgaaccgaataacagATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTCACTGATATACATGAGACCGCTCGCGATATGGGGAATGCAATGGGCATTA

Basic information

species Arabidopsis thaliana
transcript AT3G24180.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24180.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: LOC_Os10g33420.1 (Oryza sativa), 3'ss of exon 16
gtaagttttctttcttctttatatccagtctgttaattgtttcgatatcacacacacatagatatactcgagcatgatgatgatgtatctttgttgaaccgaataacagATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTCACTGATATACATGAGACCGCTCGCGATATGGGGAATGCAATGGGCATTA
     |||  ||     |    ||    | |  |   || |    | |  ||  |||     | | ||     ||   ||| |  |    ||  |   | |  |  ||| ||||||||||| ||||||||||| ||||| || || ||||| ||| |||| || || |||||| | || ||||| || |||| |||||||||||||   
-----tttcattaaaaatactaattagatattgttgatgctctcttgtttcaaccacc---gtttgctttgtgatatagataacatggggtttcttg-ctgtgttgcagGTATTGGTTCCAAACACCGGAAGGCTGGACCATAGACGGGCACTACAGGTCGCTCATCTACATGCGGCCTCTCGCCATTTGGGCAATGCAATGGGCACGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164208962|gb|ES033117.1|ES033117
EST:     ACCACTGCTGAGGGAATTTTCACAGCTGGCTGGTCAGAAGAAGGTTTCGG                         ATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTC
genomic: ACCACTGCTGAGGGAATTTTCACAGCTGGCTGGTCAGAAGAAGGTTTCGGgtaagttttc ... cgaataacagATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatagatatactcgagcatgatgatgatgtatctttgttgaaccgaataacagATATTGGTTCCAGACACCGGAAGGTTGGACAATGGATGGGCATTACCGGTCACTGATATACATGAGACCGCTCGCGATATGGGGAATGCAATGGGCATTA
     agatata  TA-rich tract