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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagaatccgcctctcattcctattgtcattattaatcatcacctcatcgaaaacgtctaataagtcatcttcctgtgcagGTGCAATTGGAGCCGAGTGGCTGAAAGCATTCAAGGGCTACATCGAGACCCCAGAATCTATGTTGCTCTAAAATTCAGACGCACACACACATCAAAAGCT

Basic information

species Arabidopsis thaliana
transcript AT3G13930.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13930.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GRMZM2G161969_T01 (Zea mays), 3'ss of exon 14
gtacagaatccgcctctcattcctattgtcattattaatcatcacctcatcgaaaacgtctaataagtcatcttcctgtgcagGTGCAATTGGAGCCGAGTGGCTGAAAGCATTCAAGGGCTACATCGAGACCCCAGAATCTATGTTGCTCTAAAATTCAGACGCACACACACATCAAAAGCT-
|||    ||  | || |      |     |||      |   |     ||  |  | |      | |  | ||    ||||||||||||| || || || |  |||||||||||||||||||||||||||| |||    || ||| |||| | || ||  ||   |   ||  | || ||    
gtaagctattggtctttgtgcgatgcctccatggactgtggactgggaattaactatgctgttcatggaaact----gtgcagGTGCAATCGGTGCGGAATTTCTGAAAGCATTCAAGGGCTACATCGAGAACCCGACTTCGATGCTGCTGTGAAGTTAGGATCGATG-ACCTAACACAATTCT

upper sequence: AT3G13930.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GRMZM2G015132_T01 (Zea mays), 3'ss of exon 17
gtacagaatccgcctctcattcctattgtcattattaatcatcacctcatcgaaaacgtctaataagtcatcttcctgtgcagGTGCAATTGGAGCCGAGTGGCTGAAAGCATTCAAGGGCTACATCGAGACCCCAGAATCTATGTTGCTCTAAAATTCAGACGCACACACACATCAAAAGCT-
        |  ||   |  |   |     ||   |||  |||   ||       |     ||| ||  | |    ||||||||| ||||| || || || |  ||||||||||||||||| |||||||||| ||||   || ||| |||| | || ||  || | |   ||  | || ||  | 
-------gtaagctattggtctgtgaccacagggttatccatggactgtggacgaggaattaacaacgc-tgaaactgtgcagGCGCAATCGGTGCGGAATTTCTGAAAGCATTCAAGGGATACATCGAGAACCCAACTTCAATGCTGCTGTGAAGTTAGGATGGATG-ACCTAACACAATTTT

upper sequence: AT3G13930.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 3'ss of exon 19
--------------------gtacagaatccgcctctcattcctattgtcattattaatcatcacct-catcgaaaacgtctaataagtcatcttcctgtgcagGTGCAATTGGAGCCGAGTGGCTGAAAGCATTCAAGGGCTACATCGAGACCCCAGAATCTATGTTGCTCTAAAATTCAGACG-CACACACACATCAAAAGCT-
                     |  | | |  |       |        |||||      || |   | |||  || ||    | |       |||    ||||||||||||||| || || |||||||| || |||||   ||| ||||||| ||||||||| |||||||| ||    ||| ||  ||    | ||||| | |   
gtaagtagctcttaacgagtatgtatattaagatgtgagtaggcgccttcattccaggccagcttttacatttaacacaaacactct-cggcctttgcttgcagGTGCAATTGGTGCAGAATGGCTGAAGGCGTTCAAATCCTATATCGAGAACCCAGAATCAATGTTGCTGTAGG--TCAAACAACAGCTTCCCATCACACGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattattaatcatcacctcatcgaaaacgtctaataagtcatcttcctgtgcagGTGCAATTGGAGCCGAGTGGCTGAAAGCATTCAAGGGCTACATCGAGACCCCAGAATCTATGTTGCTCTAAAATTCAGACGCACACACACATCAAAAGCT
                                       tcatcttcct  CT-rich tract
     attaatcat  TA-rich tract