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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactcaaactgctgaatctcagaaattcctgaattcacttgaatttggtacttctaagtttacaaattaaagtcaaaaagaaatctcaacatctgaatactgctttcttctttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGCTAGCACACACTGCGTATAAAGCCATTTGCTGGTTATATTACTCTGTTTC

Basic information

species Arabidopsis thaliana
transcript AT3G04820.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116457904|gb|EG500496.1|EG500496
EST:     CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTTT                         GTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGTTCCTCCTGGC
genomic: CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTgtaagtactc ... ttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
EST: gi|116457909|gb|EG500501.1|EG500501
EST:     CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCT                         GTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
genomic: CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTgtaagtactc ... ttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
EST: gi|116462939|gb|EG505531.1|EG505531
EST:     CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCT                         GTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
genomic: CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTgtaagtactc ... ttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
EST: gi|116457917|gb|EG500509.1|EG500509
EST:     CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTTT                         GTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
genomic: CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTgtaagtactc ... ttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
EST: gi|116457902|gb|EG500494.1|EG500494
EST:     CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTTT                         GTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGG
genomic: CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTgtaagtactc ... ttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
EST: gi|116457914|gb|EG500506.1|EG500506
EST:     CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTTT                         GTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
genomic: CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTgtaagtactc ... ttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
EST: gi|116457920|gb|EG500512.1|EG500512
EST:     CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTTT                         GTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
genomic: CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTgtaagtactc ... ttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
EST: gi|116457906|gb|EG500498.1|EG500498
EST:     CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCT                         GTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGTTCCTCCTGGC
genomic: CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTgtaagtactc ... ttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC
EST: gi|116457911|gb|EG500503.1|EG500503
EST:     CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTTT                         GTTGCATATCACAAGACACTTAACCAGTGATTAACATCCGCTCCTCCTGGC
genomic: CTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTgtaagtactc ... ttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaagtcaaaaagaaatctcaacatctgaatactgctttcttctttaattgcagGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGCTAGCACACACTGCGTATAAAGCCATTTGCTGGTTATATTACTCTGTTTC
                                           ctttaat  putative branch site (score: 4)
                               tactgctttcttcttt  CT-rich tract
                                     tttcttctttaatt  TA-rich tract