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gtaacatatatatatttacacattacgcctttgttactacataacatttaaaacagaactcatatgctctccattctcatttgtgtttaattcacagCTTATATGGGACCGAGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTTACCATGGACTGGCTTGAAGCCCATTGTAAGAAAGCTTCATCTGCTTAAG
species | Arabidopsis thaliana |
transcript | AT2G44350.2 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: ACTACACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAG CTTATATGGGACCGAGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTTEST: gi|124734316|gb|EH825718.1|EH825718
genomic: ACTACACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAGgtaacatata ... taattcacagCTTATATGGGACCGAGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTT
EST: ACTACACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAG CTTATATGGGACCGAEST: gi|124785384|gb|EH875063.1|EH875063
genomic: ACTACACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAGgtaacatata ... taattcacagCTTATATGGGACCGA
EST: CATCTGCTCTCAG CTTATATGGGACCGAGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTT
genomic: CATCTGCTCTCAGgtaacatata ... taattcacagCTTATATGGGACCGAGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTT
aacatttaaaacagaactcatatgctctccattctcatttgtgtttaattcacagCTTATATGGGACCGAGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTTACCATGGACTGGCTTGAAGCCCATTGTAAGAAAGCTTCATCTGCTTAAG
atttgtgtttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatatatatatttacacattacgcctttgttactacataacatttaaaacagaactcatatgctctccattctcatttgtgtttaattcacagCTTATATGGGACCGAGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTTACCATGGACTGGCTTGAAGCCCATTGTAAGAAAGCTTCATCTGCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA