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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtgttcctcattttggtttctgtaccctgcggtaagctgttgttcttgttggaattattgtaactaacttggtaagtcattatgcagGTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTCAGCCCCTTCCACTCTGAACGGTTCTTGCTATCGCC

Basic information

species Arabidopsis thaliana
transcript AT2G20580.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116466338|gb|EG508930.1|EG508930
EST:     TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGT                         GTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
genomic: TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGTgtaatgtgtt ... cattatgcagGTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
EST: gi|86081058|gb|DR376815.1|DR376815
EST:     AAAGACATGAGTCTTCTCTTCTGT                         GTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
genomic: AAAGACATGAGTCTTCTCTTCTGTgtaatgtgtt ... cattatgcagGTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
EST: gi|86050679|gb|DR346434.1|DR346434
EST:     TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGT                         GTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
genomic: TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGTgtaatgtgtt ... cattatgcagGTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
EST: gi|125192785|gb|EL207739.1|EL207739
EST:     TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGT                         GTGCGTATTGCTCAAGGG
genomic: TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGTgtaatgtgtt ... cattatgcagGTGCGTATTGCTCAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagctgttgttcttgttggaattattgtaactaacttggtaagtcattatgcagGTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTCAGCCCCTTCCACTCTGAACGGTTCTTGCTATCGCC
                             aactaac  putative branch site (score: 1)
                    aattattgtaactaa  TA-rich tract