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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcgctcgcttatttcaatctcattcgccttacttgtgaatttatggaacattaagctgacatcatttatgaatttgcagGTCTTTGTTCATCTCTTCTTGATGTATCTAATACACCGACTCCAG

Basic information

species Arabidopsis thaliana
transcript AT2G19950.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124883647|gb|EH962549.1|EH962549
EST:     GATGTTCCTACTTTTTTACCTT                         GTCTTTGTTCATCTCTTCTTGATGTATCTAATACACCGACTCCAGGAGCAA
genomic: GATGTTCCTACTTTTTTACCTTgtaaggcgct ... gaatttgcagGTCTTTGTTCATCTCTTCTTGATGTATCTAATACACCGACTCCAGGAGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgccttacttgtgaatttatggaacattaagctgacatcatttatgaatttgcagGTCTTTGTTCATCTCTTCTTGATGTATCTAATACACCGACTCCAG
                             agctgac  putative branch site (score: 3)
                                    atcatttatgaattt  TA-rich tract