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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgcttctcgaacaaatttcccctgatttttgttgtttctactttctaggttggtatatatattaaaagatgacttcgtctgtgttttttcagTGTTTCAGACCTGCACATGACAGCTCTTGCACTCGAACTCTGCTGCACTCTGATGACTGGAAAGAGTTGTAGTGAAAATATCAGTTTGGCGGTCCGCAAC

Basic information

species Arabidopsis thaliana
transcript AT2G02560.2
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA07G40230.2 (Glycine max), 3'ss of exon 20
gtttgtttgcttctcgaacaaatttcccctgatttttgttgtttctactttctaggttggtatatatattaaaagatgacttcgtctgtgttttttcagTGTTTCAGACCTGCACATGACAGCTCTTGCACTCGAACTCTGCTGCACTCTGATGACTGGAAAGAGTTGTAGTGAAAATATCAGTTTGGCGGTCCGCAAC
||||||   |||    | | | | ||     |||    | | |  ||     | ||||| |   | ||||      |||    |  |||||||   ||||| ||| ||| |||| |||||||||||||| || ||||||||||||||  | |||  ||  ||||| |  | | ||| |||  ||||||| ||  | |||
gtttgt---cttactaagctactctctgtacattggcataggtgatatggaat-ggttgat---tctattttcttttgat---gcttgtgttt---cagTGATTCTGACTTGCATATGACAGCTCTTGCCCTGGAACTCTGCTGCACATTAATGGGTGACAAGAGGTCAAATCAAAGTATTGGTTTGGCCGTTAGAAAC

upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA17G00570.1 (Glycine max), 3'ss of exon 19
gtttgtttgcttctcgaacaaatttcccctgatttttgttgtttctactttctaggttggtatatatattaaaagatgacttcgtctgtgttttttcagTGTTTCAGACCTGCACATGACAGCTCTTGCACTCGAACTCTGCTGCACTCTGATGACTGGAAAGAGTTGTAGTGAAAATATCAGTTTGGCGGTCCGCAAC
        | || ||  || ||| | | ||      |||   ||    |   |    ||| ||   |      |  |   || ||   |  | |||||||| ||| ||| |||| |||||||||||||| || ||||||||||||||  | |||  ||  ||||| |  | | ||| |||  | ||||| ||  | |||
--------gtttgtcttactaatctactct-----ctgtacattggcataggtgatatggaatgcttgactccattttcttttgttgcttgtgtttcagTGATTCTGACTTGCATATGACAGCTCTTGCCCTGGAACTCTGCTGCACATTAATGGGTGACAAGAGGTCAAATCAAAGTATTGGCTTGGCTGTTAGAAAC

upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 20
------------------gtttgtttgcttctcgaacaaatttcccc--tgatttttgttgtttctactttctagg---ttggtatatatattaaaagatgacttcgtctgtgttttt---tcagTGTTTCAGACCTGCACATGACAGCTCTTGCACTCGAACTCTGCTGCACTCTGATGACTGGAAAGAGTTGTAGTGAAAATATCAGTTTGGCGGTCCGCAAC
                   |||| ||| |      |   ||||      |  ||||  |  ||   ||  | | |    || | |||| |  |      | | |     ||| ||| |    ||||| ||||||| |||| |||||||||||||| || ||||| ||||||||  ||||| |||  |||||    ||   |||| |  ||||||| ||  | |||
gtttttctcttcttaaccttttgcttgatatcatcatttatttatttgttccttttcataattcgcacggttttgcctcttaggatatcttctgtgccctaattcaaggtgtttttgtatgccagTGATTCAGACTTGCATATGACAGCTCTTGCCCTGGAACTTTGCTGCACCTTGATGGCTGACAAGAGGGCAAGCCCAAATGTTGGTTTGGCTGTTAGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactttctaggttggtatatatattaaaagatgacttcgtctgtgttttttcagTGTTTCAGACCTGCACATGACAGCTCTTGCACTCGAACTCTGCTGCACTCTGATGACTGGAAAGAGTTGTAGTGAAAATATCAGTTTGGCGGTCCGCAAC
                                            tgttttttc  CT-rich tract
                tatatatattaaaaga  TA-rich tract