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gtaaggcaaacagacacaagtggagtcaaagtgttgacaaactcaggctaatgggtttgtgcaattttgggtttgcagATCCAATGAGGGGCAAGGGAAGATGGTGTTGGCAAGCTCAGGCTCACGA
species | Arabidopsis thaliana |
transcript | AT1G79830.4 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGAGATGTACAGGGAGCAAGTGAACATGCTGGTGAACAAG ATCCAATGAGGGGCAAGGGAAGATGGTGTTGGCAAGCTCAGGCTCACGAGEST: gi|125138494|gb|EL177849.1|EL177849
genomic: TGAAGGAGATGTACAGGGAGCAAGTGAACATGCTGGTGAACAAGgtaaggcaaa ... gggtttgcagATCCAATGAGGGGCAAGGGAAGATGGTGTTGGCAAGCTCAGGCTCACGAG
EST: TGGACTTGAAGGAGATGTACAGGGAGCAAGTGAACATGCTGGTGAACAAG ATCCAATGAGGGGCAAGGGAAGATGGTGTTGGCAAGCT
genomic: TGGACTTGAAGGAGATGTACAGGGAGCAAGTGAACATGCTGGTGAACAAGgtaaggcaaa ... gggtttgcagATCCAATGAGGGGCAAGGGAAGATGGTGTTGGCAAGCT
agtcaaagtgttgacaaactcaggctaatgggtttgtgcaattttgggtttgcagATCCAATGAGGGGCAAGGGAAGATGGTGTTGGCAAGCTCAGGCTCACGA
ggctaat putative branch site (score: 3)
aatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcaaacagacacaagtggagtcaaagtgttgacaaactcaggctaatgggtttgtgcaattttgggtttgcagATCCAATGAGGGGCAAGGGAAGATGGTGTTGGCAAGCTCAGGCTCACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA