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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgattactttcctcataagttagctcttcactctgcttatatgaatacttatataaagtgtttatactaattcagGAGGCGAACAGGCGTGGAAATAACTGGTTACCTCCTCCATGGGCAATTCTTGCATTGATCGTCCTTGGATTCAACGAATTCATGACTCTTTTAAG

Basic information

species Arabidopsis thaliana
transcript AT1G72960.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72960.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA15G02780.1 (Glycine max), 3'ss of exon 20
------------------------gcatgattactttcctcataagttag-ctcttcactctgcttatatgaatacttatataaagtgtttatactaattcagGAGGCGAACAGGCGTGGAAATAACTGGTTACCTCCTCCATGGGCAATTCTTGCATTGATCGTCCTTGGATTCAACGAATTCATGACTCTTTTAAG
                        ||||  | | ||   |||    | |  |  || |||    ||   | | |  | || ||   | ||| || |  ||||||| || ||||  ||| | |  ||||||||||||||||||||||| ||| | || |||||  | |||||||| || ||||| ||||| ||||||||
acatcatggatgcatattatgtaggcatt-tgatttctgtcactgatcaaacattttactaacttttacttattgatgatgtagtttatttttaat--ttcagGAAGCCAACAATCGTAGCAGCAACTGGTTACCTCCTCCATGGGCGATTGTGGCTTTGATTATTCTTGGATTTAATGAATTTATGACACTTTTAAG

upper sequence: AT1G72960.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 20
---------------------gcatgattactttcctcataagttagctcttcactctgcttatatgaatacttatataaagtgtttatactaatt--cagGAGGCGAACAGGCGTGGAAATAACTGGTTACCTCCTCCATGGGCAATTCTTGCATTGATCGTCCTTGGATTCAACGAATTCATGACTCTTTTAAG
                     | || |  |  || | |  |   |  | | | ||  |   |   |   || || | |  | |   | |   ||||  ||||| || |||| ||||   || ||||||||||| ||||||||||||||| ||||  || ||||||| |||||||| ||||| ||||| ||| ||||
caatattttctttgagaaacagtatcaaaatatttcactaaccatgccccattaccgtcaatg-gtatctaattgttttcacttcctctttcaattatcagGAAGCCAACAAGCGTAATAACAACTGGTTACCACCTCCATGGGCAATTGTTGCTATGGTCGTCCTGGGATTCAATGAATTTATGACACTTCTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctcttcactctgcttatatgaatacttatataaagtgtttatactaattcagGAGGCGAACAGGCGTGGAAATAACTGGTTACCTCCTCCATGGGCAATTCTTGCATTGATCGTCCTTGGATTCAACGAATTCATGACTCTTTTAAG
                                            tactaat  putative branch site (score: 1)
                ttatatgaatacttat  TA-rich tract