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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcccacaagaaggagcatacatagtcgaaattatcttcttcaatgataagaaagaacattgttttgatgcagTTCTATGTATATGAAACGTAACACTGAGCATGATGCACCATACTGGAGAGGTCCTATATGGATGAACATGAACTACATGATTCTTTCTTCTCTTTACCAT

Basic information

species Arabidopsis thaliana
transcript AT1G67490.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67490.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 3'ss of exon 19
--------------gtaagcccacaagaaggagcatacatagtcgaaattatct--tcttcaa-------tgataagaaagaac-attgttt-tgatgcagTTCTATGTATATGAAACGTAACACTGAGCATGATGCACCATACTGGAGAGGTCCTATATGGATGAACATGAACTACATGATTCTTTCTTCTCTTTACCAT
                ||  | |||  |    | |||||||| |   ||| | |  ||||          ||||  |||  | |  ||||   || | |||||| || |||||||| || ||||||||||||||| | ||||| ||||||||| | || ||||| |||||||||||||||||||||||    ||  |||| 
gcttgttaatgaattaaaatcaacataacaatgtatacatag-cattattgtttggtcttttggttactctgatctgaattatctgttgtccatggtccagTTCAATATATATGAAGCGCAACACTGAGCATGATCCCCCATATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGATTCTTTCAGGACTACACCAC

upper sequence: AT1G67490.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GRMZM2G071675_T01 (Zea mays), 3'ss of exon 2
---------------gtaagcccacaagaaggagcatacatagtcgaaattatcttcttcaatgataaga-----aagaacattgtttt----gatgcagTTCTATGTATATGAAACGTAACACTGAGCATGATGCACCATACTGGAGAGGTCCTATATGGATGAACATGAACTACATGATTCTTTCTTCTCTTTACCAT
                        ||||| ||   ||| |        |||   |  | |||  |   |      ||| |  |  ||||    | | |||||| || |||||||| ||||| || ||||||||  | || || ||||||||| | || ||||| ||||||||||||||| |||||||  | ||  | || 
tcccaatgccttattactgtagttcaagatggtttatatagctatattatttggtcatccaacaactgggttctgaagtatctatttttacatggtccagTTCAATATATATGAAGCGTAATACAGAGCATGACCCCCCTTATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGGTTCTTTCGGCACTACATCAC

upper sequence: AT1G67490.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: EFJ24054 (Selaginella moellendorffii), 3'ss of exon 20
gtaagcccacaagaaggagcatacatagtcgaaattatcttcttcaatgataagaaagaacattgttttgatgc-agTTCTATGTATATGAAACGTAACACTGAGCATGATGCACCATACTGGAGAGGTCCTATATGGATGAACATGAACTACATGATTCTTTCTTCTCTTTACCAT
                     ||     |    |   | || ||  |  ||   |  ||   ||  || | | | || ||||| ||||  | ||||||||| |||||||| || || ||||||||||| ||| ||||||| |||||||||||  |  | ||||| || ||| || | 
--------------------gta-gcgatttctacgtttttgttggaacatttcatcgactctttcttcgtttccagCTCTATTTATAACAGACGTAACACCGAGCATGACGCTCCTTACTGGAGAGGCCCTGTATGGATCAACATGAACTATCTCGTCCTTTCATCCCTTCACTAC

upper sequence: AT1G67490.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: EFJ35102 (Selaginella moellendorffii), 3'ss of exon 19
gtaagcccacaagaaggagcatacatagtcgaaattatcttcttcaatgataagaaagaacattgttttgatgc-agTTCTATGTATATGAAACGTAACACTGAGCATGATGCACCATACTGGAGAGGTCCTATATGGATGAACATGAACTACATGATTCTTTCTTCTCTTTACCAT
                     ||     |    |   | || ||  |  ||   |  ||   ||  |||| | | || ||||| ||||  | ||||||||| |||||||| || || |||||||| || ||| ||||||| |||||||||||  |  | ||||| || ||| || | 
--------------------gta-gcgatttctacgtttttgttggaacatttcatcgactctttctttgtttccagCTCTATTTATAACAGACGTAACACCGAGCATGACGCTCCTTACTGGAGGGGCCCTGTATGGATCAACATGAACTATCTCGTCCTTTCATCCCTTCACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatagtcgaaattatcttcttcaatgataagaaagaacattgttttgatgcagTTCTATGTATATGAAACGTAACACTGAGCATGATGCACCATACTGGAGAGGTCCTATATGGATGAACATGAACTACATGATTCTTTCTTCTCTTTACCAT
                                            ttttgat  putative branch site (score: 4)
                                         ttgtttt  CT-rich tract
          aaattatctt  TA-rich tract