1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaatctacactcatattaacgatacctttatccacttttgtcactatatcctgaatatctctaaagtatatgtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTATGATAAGCAGCTAGACAGTGGAAGAGGTACTCTGCTTCACTTGTGTGAT
species | Arabidopsis thaliana |
transcript | AT5G13940.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GCAGCCATACTTAGCACAGTCGTCGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116481915|gb|EG524507.1|EG524507
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116481924|gb|EG524516.1|EG524516
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116480243|gb|EG522835.1|EG522835
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116481923|gb|EG524515.1|EG524515
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116480191|gb|EG522783.1|EG522783
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116481912|gb|EG524504.1|EG524504
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116481910|gb|EG524502.1|EG524502
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116480267|gb|EG522859.1|EG522859
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTCGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116481918|gb|EG524510.1|EG524510
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116481916|gb|EG524508.1|EG524508
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116480218|gb|EG522810.1|EG522810
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTEST: gi|116481922|gb|EG524514.1|EG524514
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCT
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTAEST: gi|116480168|gb|EG522760.1|EG522760
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
tttatccacttttgtcactatatcctgaatatctctaaagtatatgtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTATGATAAGCAGCTAGACAGTGGAAGAGGTACTCTGCTTCACTTGTGTGAT
ctctaaa putative branch site (score: 3)
taaagtatatgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctacactcatattaacgatacctttatccacttttgtcactatatcctgaatatctctaaagtatatgtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTATGATAAGCAGCTAGACAGTGGAAGAGGTACTCTGCTTCACTTGTGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG