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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctccaaccagcatcatttacatcttaaccattgcttacagttctgtgctaaccgggtttcacaagcagATGAAAGGAAAAGAAGATTTTGGACCGCATGCAGCCTCCTTCTAGCAGCTGTTAGGTTGTATTGTTATTTATGGATGAGTTTGTCGAGCGGTGGGGTTAA

Basic information

species Arabidopsis thaliana
transcript AT4G38240.3
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085510|gb|DR381269.1|DR381269
EST:     GCCAGATTCTGTAATGCAGCTTGGAATTCGAAATTCCTGATGCAAAACAT                         ATGAAAGGAAAAGAAGATTTTGGACCGCATGCAGCCTCCTTCTAGCAGCTG
genomic: GCCAGATTCTGTAATGCAGCTTGGAATTCGAAATTCCTGATGCAAAACATgtacttctcc ... tcacaagcagATGAAAGGAAAAGAAGATTTTGGACCGCATGCAGCCTCCTTCTAGCAGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttacatcttaaccattgcttacagttctgtgctaaccgggtttcacaagcagATGAAAGGAAAAGAAGATTTTGGACCGCATGCAGCCTCCTTCTAGCAGCTGTTAGGTTGTATTGTTATTTATGGATGAGTTTGTCGAGCGGTGGGGTTAA
                                tgctaac  putative branch site (score: 1)
       atcttaa  TA-rich tract