Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatattctaccctctttctcacagttcaacatcaattgtgctcataaacaaattaaaatgcattagattctgcttttatactaatctaagaacttgaaccgtagaattgtacttacagtccaaagttttcatccatttctttttcgtttttttcctcatcttgatgaaaagGGAAGGGAGAAGGATGTTGCAATATTTTCATGCGTCAGAGCTAACGAAAATGGACAAATCGGTTTTCTCTCTAATTCTCGGCGGATGAATGTGGGGATTA

Basic information

species Arabidopsis thaliana
transcript AT4G15570.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116422172|gb|EG464764.1|EG464764
EST:     GTACAGAGGCAGAAAAAGTGGTTGATATCAACACTGTTGATGGGTTCCAG                         GGAAGGGAGAAGGATGTTGCAATATTTTCATGCGTCAGAGCTAACGAAAAT
genomic: GTACAGAGGCAGAAAAAGTGGTTGATATCAACACTGTTGATGGGTTCCAGgtcaatattc ... tgatgaaaagGGAAGGGAGAAGGATGTTGCAATATTTTCATGCGTCAGAGCTAACGAAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtccaaagttttcatccatttctttttcgtttttttcctcatcttgatgaaaagGGAAGGGAGAAGGATGTTGCAATATTTTCATGCGTCAGAGCTAACGAAAATGGACAAATCGGTTTTCTCTCTAATTCTCGGCGGATGAATGTGGGGATTA
                                          tcttgat  putative branch site (score: 4)
         ttttcatccatttctt  CT-rich tract
                       tttttcgttttttt  TA-rich tract