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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatcaagtaactgagagatatatttgtatcagaacatgtataaggtaatttagaaaatggaatctaattgcttcatttaatgccaccaacagGAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCTGTTTACAGCCCTCTCGTTCACGAGAAATAGACAACAACTCTATATAACTCTTCTCAGG

Basic information

species Arabidopsis thaliana
transcript AT4G00570.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00570.1 (Arabidopsis thaliana), 3'ss of exon 18
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 18
----gtatgaatcaagtaactgagagatatatttgtatcagaacatgtataaggtaatttagaaaatggaatctaattgcttcatttaatgccaccaacagGAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCTGTTTACAGCCCTCTCGTTCACGAGAAATAGACAACAACTCTATATAACTCTTCTCAGG---
    || |  |  || ||  |    || | || | ||  | |   ||   ||   | | || | |     |      |  ||   | | ||  |    |||||||| || ||| | ||||| | ||| || |||||||||||  ||||||||||||| ||||| ||||||||     | | | | | |   |||||  |||   
aactgttttcaaaaactatttttttgaaaaatatttaggaaatgctgccaaaacaagtgtaaatataatgacactccttttttgctgattgtgaatg-cagGAGGAGACGGTGGAATACATCATACGTAATATGTGGTTCCCCATTTACAGCCCTCTTGTTCATGAGAAATAAG--GCTATTGT-TGTTTTTCTTCAAAGGTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164223387|gb|EL991920.1|EL991920
EST:     GATCTCAGCCACATGTCTAAG                         GAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCAGTTTACAGC
genomic: GATCTCAGCCACATGTCTAAGgtatgaatca ... ccaccaacagGAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCTGTTTACAGC
EST: gi|124732340|gb|EH823742.1|EH823742
EST:     ACATGGTGATGTTGGTCCCAAAGATCTCAGCCACATGTCTAAG                         GAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCTGTTTACAGC
genomic: ACATGGTGATGTTGGTCCCAAAGATCTCAGCCACATGTCTAAGgtatgaatca ... ccaccaacagGAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCTGTTTACAGC
EST: gi|116463393|gb|EG505985.1|EG505985
EST:     CAGGAGGACATGGTGATGTTGGTCCCAAAGATCTCAGCCACATGTCTAAG                         GAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCTGTTTACAGC
genomic: CAGAAGGACATGGTGATGTTGGTCCCAAAGATCTCAGCCACATGTCTAAGgtatgaatca ... ccaccaacagGAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCTGTTTACAGC
EST: gi|125166392|gb|EL192211.1|EL192211
EST:     CAGAAGGACATGGTGATGTTGGTCCCAAAGATCTCAGCCACATGTCTAAG                         GAGGATACAGTGAATTACATTACACGCAACATGTGGTTCC-TGTTTA
genomic: CAGAAGGACATGGTGATGTTGGTCCCAAAGATCTCAGCCACATGTCTAAGgtatgaatca ... ccaccaacagGAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCTGTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtataaggtaatttagaaaatggaatctaattgcttcatttaatgccaccaacagGAGGATACAGTGAATTACATTACACGCAACATGTGGTTCCCTGTTTACAGCCCTCTCGTTCACGAGAAATAGACAACAACTCTATATAACTCTTCTCAGG
        taatttagaaaat  TA-rich tract