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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctatggaattcttcttcaaatctttttctcggagtaatgcgttagaaaagtagttcattatatcttcatacgaatgcatttacacaaacatgaaatttgggtaaaatgaataggtgcagagttgtagtcgaaacttacagcatatggtctagtgtttatggtttccgtaatattataccgaatgtaaaccagGCAATGAAACAGTCGGTGCAGTCTGATCTCCGGCATCAAGTTTCCTTACTAGTTCGTCCAATGCAACAG

Basic information

species Arabidopsis thaliana
transcript AT3G61420.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164095911|gb|EL969552.1|EL969552
EST:     GTTGGTAAACTGAAGGATGCAATGTCCAATACTTATTCACTACTCGAT                         GCAATGAAACAGTCGGTGCAGTCTGATCTCCGGCATCAAGTTTCCTTACTA
genomic: GTTGGTAAACTGAAGGATGCAATGTCCAATACTTATTCACTACTCGATgtaagctatg ... tgtaaaccagGCAATGAAACAGTCGGTGCAGTCTGATCTCCGGCATCAAGTTTCCTTACTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcatatggtctagtgtttatggtttccgtaatattataccgaatgtaaaccagGCAATGAAACAGTCGGTGCAGTCTGATCTCCGGCATCAAGTTTCCTTACTAGTTCGTCCAATGCAACAG
                              taatattata  TA-rich tract