1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tagaaattgcatttgaaacgatggagaccatataattaaacaatttggtcaaacagaagatgctgactggattttgtttgttgtggtgaaaataaaacagTTTCTGCCGGTAGCATCAGCATTGTTGATAGGTGGTGTAACAGTGACATCTTTCACAATTCATCAAG
species | Arabidopsis thaliana |
transcript | AT3G51830.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TGGGCACACACAGCCCTTCACAACTCCAGCCCATTGGATCACAACCGTCT TTTCTGCCGGTAGCATCAGCATTGTTGATAGEST: gi|164184613|gb|ES068087.1|ES068087
genomic: TGGGCACACACAGCCCTTCACAACTCCAGCCCATTGGATCACAACCGTCTgtatgttcct ... aataaaacagTTTCTGCCGGTAGCATCAGCATTGTTGATAG
EST: CACACACAGCCCTTCACAACTCCAGCCCATTGGATCACAACCG-CT TTTCTGCCGGTAGCATCAGCATTGTTGATAGGTGGTGTAACAGTGACATC
genomic: CACACACAGCCCTTCACAACTCCAGCCCATTGGATCACAACCGTCTgtatgttcct ... aataaaacagTTTCTGCCGGTAGCATCAGCATTGTTGATAGGTGGTGTAACAGTGACATC
tggtcaaacagaagatgctgactggattttgtttgttgtggtgaaaataaaacagTTTCTGCCGGTAGCATCAGCATTGTTGATAGGTGGTGTAACAGTGACATCTTTCACAATTCATCAAG
tgctgac putative branch site (score: 2)
tgaaaataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaaattgcatttgaaacgatggagaccatataattaaacaatttggtcaaacagaagatgctgactggattttgtttgttgtggtgaaaataaaacagTTTCTGCCGGTAGCATCAGCATTGTTGATAGGTGGTGTAACAGTGACATCTTTCACAATTCATCAAG
- - - - - - - gaaacga
- - - - - - - - - - - -gagacca
- - - - - - - - - - - - - - - - - - taaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - aaacaga