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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagaatactttttacacatcttattatggaccattgcgagcatgacagctcttgttgatcggtatttgctttcggttgtgtaattgtttccgtcctcttccatttattacagAAGAGGTGGTCTTATAGCAAGAAAGGCACAAGAACTAAACCTAGTTCTTCAAACACCATAGCTCCTGGTTCAAAGTCAAGACCACTCGGAATCACTTGCG

Basic information

species Arabidopsis thaliana
transcript AT1G61210.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402379|gb|EG444971.1|EG444971
EST:     TGTTCTGCGGAATTGCAAAAGGTTCAGAAGATTCTTCCCCTACTGACAAG                         AAGAGGTGGTCTTATAGCAAGAAAGGCCCAAGAACTAAACCTAGTTCTTCA
genomic: TGTTCTGCGGAATTGCAAAAGGTTCAGAAGATTCTTCCACTACTGACAAGgtaaaagaat ... tttattacagAAGAGGTGGTCTTATAGCAAGAAAGGCACAAGAACTAAACCTAGTTCTTCA
EST: gi|116416015|gb|EG458607.1|EG458607
EST:     TGTTCTGCGGAATTGCAAAAGGTTCAGAAGATTCTTCCACTACTGACAAG                         AAGAGGTGGTCTTATAGCAAGAAAGGCACAAGAACTAAACCTAGTTCTTCA
genomic: TGTTCTGCGGAATTGCAAAAGGTTCAGAAGATTCTTCCACTACTGACAAGgtaaaagaat ... tttattacagAAGAGGTGGTCTTATAGCAAGAAAGGCACAAGAACTAAACCTAGTTCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcggtatttgctttcggttgtgtaattgtttccgtcctcttccatttattacagAAGAGGTGGTCTTATAGCAAGAAAGGCACAAGAACTAAACCTAGTTCTTCAAACACCATAGCTCCTGGTTCAAAGTCAAGACCACTCGGAATCACTTGCG
 tgttgat  putative branch site (score: 4)
                          ttgtttccgtcctctt  putative PPT
                                            atttattaca  TA-rich tract