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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagaaaacgttgtggaagaatatacgagtttagtgtattacccaaaaatccaaataactctttggtgttgttttgcagTTACCAGTGCCTCAACTTGAAAGTATCATGAAGAAGTTTCCTGATCTAAGACCTTCCCTCACTGCTTATGCGAATCAGCCAACTATCAGATCTTCTCTAC

Basic information

species Arabidopsis thaliana
transcript AT1G27595.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164063054|gb|ES143251.1|ES143251
EST:     GACAAAGTCCGCATTCTTTCCCTGTTTTATTGGAG                         TTACCAGTGCCTCAACTTGAAAGTATCATGAAGAAGTTTCCTGATCTAAGA
genomic: GACAAAG-CCGCATTCTTTCCCTGTTTTATTGGAGgtacaagaaa ... tgttttgcagTTACCAGTGCCTCAACTTGAAAGTATCATGAAGAAGTTTCCTGATCTAAGA
EST: gi|124733621|gb|EH825023.1|EH825023
EST:     TAAAATGTGTGTCTCAGACAAAGCCGCATTCTTTCCCTG-TTTATTGGAG                         TTACCAGTGCCTCAACTTGAAAGTATCATGAAGAAGTTTCCNGATCTAAGA
genomic: TAAAATGTGTGTCTCAGACAAAGCCGCATTCTTTCCCTGTTTTATTGGAGgtacaagaaa ... tgttttgcagTTACCAGTGCCTCAACTTGAAAGTATCATGAAGAAGTTTCCTGATCTAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgagtttagtgtattacccaaaaatccaaataactctttggtgttgttttgcagTTACCAGTGCCTCAACTTGAAAGTATCATGAAGAAGTTTCCTGATCTAAGACCTTCCCTCACTGCTTATGCGAATCAGCCAACTATCAGATCTTCTCTAC
                            aaataac  putative branch site (score: 2)
                                            ttgtttt  putative PPT
                    aaaaatccaaataa  TA-rich tract