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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagttatgcatctcctctgcatttactttagtccaagatttcctctcatctccctcatgttttctcatgagactcacttttgtttccttgttgaatagGTTAATCCAATTGCGGTCAATAGCAAGTACTGTAATGTATTCACGGAAAATAAACGAACCGTTGCAATTATATCAACAGCAGAATTTGGAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G57190.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57190.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA15G05680.1 (Glycine max), 3'ss of exon 18
gtatgtagttatgcatctcctctgcatttactttagtccaagatttcctctcatctccctcatgttttctcatgagactcacttttgtttccttgttgaat-----agGTTAATCCAATTGCGGTCAATAGCAAGTACTGTAATGTATTCACGGAAAATAAACGAACCGTTGCAATTATATCAACAGCAGAATTTGGAAAG
||||||        | ||     | | | |  |  |||  | || |  |||  | ||     |   ||||||   |  |  |      |  | ||||  |      |||| ||||| ||||| || ||||| |||||||||||||| |||||||| || ||  ||    || |||  || ||||| | ||| |||||||||
gtatgtgtaataataacttgagggaaatgatat--gtcatatatattgtctattttcttctgttaattctcagttgtgtttccccccctatcgtgttctactcctcagGTGAATCCCATTGCTGTAAATAGTAAGTACTGTAATGTCTTCACGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAG

upper sequence: AT5G57190.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA08G19310.2 (Glycine max), 3'ss of exon 16
-------------------gtatgtagttatgcatctcctctgcatttactttagtccaagatttcctctcatctccctcatgttttctcatgagactcacttttgtttccttgttgaatagGTTAATCCAATTGCGGTCAATAGCAAGTACTGTAATGTATTCACGGAAAATAAACGAACCGTTGCAATTATATCAACAGCAGAATTTGGAAAG
                   |     | | ||   ||   | |  || ||  |   |    | | |  | || |     | ||  |   |  ||     | | | |  |    |  |    |||| ||||| ||||| || |||||||||||||| ||||| |||||||| || ||  ||   ||| ||||  | ||||| | ||| |||||||||
gtatgtgtaataataacttgagaaaaatgataagtcatatatatatatatatatatatttg-tctattttctttctgttaattctcatttgtgttttccccctattgtgttctactcctcagGTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAG

upper sequence: AT5G57190.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv12s0055g00710.t01 (Vitis vinifera), 3'ss of exon 14
--gtatgtagttatgcatctcctctgcatttactttagtcca--agatttcctctcatctccctcatgttttctcatgagactcacttttgtttccttgttgaatagGTTAATCCAATTGCGGTCAATAGCAAGTACTGTAATGTATTCACGGAAAATAAACGAACCGTTGCAATTATATCAACAGCAGAATTTGGAAAG
   | || | ||||  ||||  |    ||| |  || ||     | | |   | |    | | |||    ||| |||||   |    ||| |||| || |    ||||||||||| ||||| || ||||||||||| || ||||||||||| || || || |||   ||  |  |||| |||||| |||| ||||| |||
gtatgtgcaattat-tatctgttgaa-attcatgtttgttttgcaaactgtttttttgtttcttcagaacttcccatgatcttttactttatttctttct--gctagGTTAATCCCATTGCTGTGAATAGCAAGTATTGCAATGTATTCACAGAGAACAAGCGAGTAGTATCTGTTATTTCAACATCAGATTTTGGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcatctccctcatgttttctcatgagactcacttttgtttccttgttgaatagGTTAATCCAATTGCGGTCAATAGCAAGTACTGTAATGTATTCACGGAAAATAAACGAACCGTTGCAATTATATCAACAGCAGAATTTGGAAAG
                           gactcac  putative branch site (score: 2)
                             ctcacttttgtttcct  CT-rich tract
                                  ttttgttt  TA-rich tract