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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttacagtgtgttggaaaagtaagaagaaaacatacaaacattatgtatttagtctcctatgattgaaagagcctgatttggaagttttctcaattgtagTCGGAACCTGGGAAAAAGCTCCCATTCATCCTAGTCATCAATCTACAG

Basic information

species Arabidopsis thaliana
transcript AT5G35180.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060090|gb|DR355847.1|DR355847
EST:     TTGATAGTGCTGTAGACAACATCGCCCTGCATCCAAAATGTCTTATCCAG                         TCGGAACCTGGGAAAAAGCTCCCATTCATCCTAGTCATCAATCTACAG
genomic: TTGATAGTGCTGTAGACAACATCGCCCTGCATCCAAAATGTCTTATCCAGgtactccctt ... tcaattgtagTCGGAACCTGGGAAAAAGCTCCCATTCATCCTAGTCATCAATCTACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttagtctcctatgattgaaagagcctgatttggaagttttctcaattgtagTCGGAACCTGGGAAAAAGCTCCCATTCATCCTAGTCATCAATCTACAG
                          gcctgat  putative branch site (score: 4)
                                        ttttctc  putative PPT
             tatgatt  TA-rich tract