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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattccttctcttttctatttctcactatttgaaatgctattgttatgtggagttaattatagtttctttgattgtttctcagGCAGAAGCTGCTGCTGCTGCTGGTGAAAGTAGCTTTAAATCCTTCATGGTTGCTGTGCAACGTTGCGGTAGCAGTGTTGCTATAGTTCAGCAG

Basic information

species Arabidopsis thaliana
transcript AT5G12370.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA16G01660.1 (Glycine max), 3'ss of exon 16
gtaattccttctcttttctatttctcactatttgaa---atgctattgttatgtggagttaattata---------gtttctttgattgtttctcagGCAGAAGCTGCTGCTGCTGCTGGTGAAAGTAGCTTTAAATCCTTCATGGTTGCTGTGCAACGTTGCGGTAGCAGTGTTGCTATAGTTCAGCAG
|||||| | | |||| | | | || | || || | | | || | ||| | || || ||| | |||||||| || || || ||||||||||||||||| || | ||| |||||| ||||||||||||||| || |||||||| ||||| |||| ||
gtaattacatgatttttttgcatgctcttgttaaagtatatagtacatatgagcacatttcaccatacatattcaagatttatttgttgatatgcagGCAGAGGCGGCGGCAGCTGCTGGTGAAAGTAGTTTCAGATCTTTCATGATTGCTGTGCAACGTTCTGGAAGCAGTGTAGCTATTATTCAACAA

upper sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA07G05160.1 (Glycine max), 3'ss of exon 16
--------gtaattccttctcttttctatttctcactatttgaaatgc-----tattgttatgtggagttaattatagtttctttgattgtttctcagGCAGAAGCTGCTGCTGCTGCTGGTGAAAGTAGCTTTAAATCCTTCATGGTTGCTGTGCAACGTTGCGGTAGCAGTGTTGCTATAGTTCAGCAG
||||| || | | | | | ||| | || | || || || | | ||| |||| ||| | |||||||| || || || ||||||||||||||||| || | ||| || ||| ||||||| ||||||| || |||||||| ||||| |||| ||
gtaattacataatttttttgcatactcttgttaaagtatatagtatatatgagcacatttcaccagacatattcaagatttatttg-ttgatatgcagGCAGAGGCGGCAGCAGCTGCTGGTGAAAGTAGTTTCAGATCTTTTATGATTGCTGTACAACGTTCTGGAAGCAGTGTAGCTATTATTCAACAA

upper sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 16
----------------------------------------------gtaattcct-tctcttttctatttctcactatttgaaatgctattg------ttatgtggagttaatt-------atagtttctttgattgtttctcagGCAGAAGCTGCTGCTGCTGCTGGTGAAAGTAGCTTTAAATCCTTCATGGTTGCTGTGCAACGTTGCGGTAGCAGTGTTGCTATAGTTCAGCAG
|| | | | ||| ||| || | | | | | | ||||| |||| | || | || | || | | | | || | ||||||||||||||||||||||||||||||| || || | ||| |||||||| ||||| || ||||| | ||||||||| ||||| ||||||||
gtaattacttgatcacatggccattttctgcattttaaaatttactctactacatacctcaattcaatgtatatgcttcttagaaagtattgaataatttatctagaaattatcgggcataagagaatttgttactgatgtgtagGCAGAAGCTGCTGCTGCTGCTGGTGAAAGCAGTTTCAGATCTTTCATGGTGGCTGTACAGCGTTGTGCTAGCAGTGTGGCTATTGTTCAGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaaatgctattgttatgtggagttaattatagtttctttgattgtttctcagGCAGAAGCTGCTGCTGCTGCTGGTGAAAGTAGCTTTAAATCCTTCATGGTTGCTGTGCAACGTTGCGGTAGCAGTGTTGCTATAGTTCAGCAG
                                            ttgtttctc  CT-rich tract
 ttaattatagtttctt  TA-rich tract