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...cacacaaccaccttttaaactacactgctgctggagttaaagatcaatgtattataagtttttatctccttatgatgccttccttctctgcgagtttcagGTCAAGGGAAAGGATTCGACATAGACTTAGTAAAGCTCATCTCAGATTCAGTAGGCATACCGGTGATCGCAAGCAGTGGAGCAGGTACTCCCGACCACTT
species | Arabidopsis thaliana |
transcript | AT4G26900.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AGAATTAGGTGCCGGTGAAATACTATTGAACTGCATAGACTGTGATG GTCAAGGGAAAGGATTCGACATAEST: gi|125249752|gb|EL263837.1|EL263837
genomic: AGAATTAGGTGCCGGTGAAATACTATTGAACTGCATAGACTGTGATGgtacactcaa ... cgagtttcagGTCAAGGGAAAGGATTCGACATA
EST: AAGAATTAGGTGCCGGTGAAATACTATTGAACTGCATAGACTGTGATG GTCAAGGGAAAGGATTCGACATAEST: gi|125313199|gb|EL327284.1|EL327284
genomic: AAGAATTAGGTGCCGGTGAAATACTATTGAACTGCATAGACTGTGATGgtacactcaa ... cgagtttcagGTCAAGGGAAAGGATTCGACATA
EST: AGGTGCCGGTGAAATACTATTGAACTGCATAGACTGTGATG GTCAAGGGAAAGGATTCGACATAEST: gi|164157258|gb|ES023376.1|ES023376
genomic: AGGTGCCGGTGAAATACTATTGAACTGCATAGACTGTGATGgtacactcaa ... cgagtttcagGTCAAGGGAAAGGATTCGACATA
EST: CTATTGAACTGCATAGACTGTGATG GTCAAGGGAAAGGATTCGACATAGACTTAGTAAAGCTCATCTCAGATTCAG
genomic: CTATTGAACTGCATAGACTGTGATGgtacactcaa ... cgagtttcagGTCAAGGGAAAGGATTCGACATAGACTTAGTAAAGCTCATCTCAGATTCAG
aatgtattataagtttttatctccttatgatgccttccttctctgcgagtttcagGTCAAGGGAAAGGATTCGACATAGACTTAGTAAAGCTCATCTCAGATTCAGTAGGCATACCGGTGATCGCAAGCAGTGGAGCAGGTACTCCCGACCACTT
tgccttccttctctgc CT-rich tract
attataagtttttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacaaccaccttttaaactacactgctgctggagttaaagatcaatgtattataagtttttatctccttatgatgccttccttctctgcgagtttcagGTCAAGGGAAAGGATTCGACATAGACTTAGTAAAGCTCATCTCAGATTCAGTAGGCATACCGGTGATCGCAAGCAGTGGAGCAGGTACTCCCGACCACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-acacaac
- - - - - - - - -aactaca
- - - - - - - - - - - - ctgctgc
- - - - - - - - - - - - - - - - - - - -aagatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatctcc