Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattacaagttgtctctatggatccattaatgtgtaaacagatttgcctaatgagaaacatttactgtgagcagTCCAATGCAGCAACACACAGTTGGACCTCCACAGTCGAGTGGCTTCACAATGACATCATCAATGCAACCGAATATGTTGGACCGCCCGTGGATGGCCGTG

Basic information

species Arabidopsis thaliana
transcript AT4G13020.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828713|gb|CK118397.1|CK118397
EST:     AACGGCCTCCACGCGCCAGTTGAATCATCTCCTTTATCTTTGTCTTTCAG                         TCCAATGCAGCAACACACAGTTGGACCTCCACAGTCGAGTGGCTTCACAAT
genomic: AACGGCCTCCACGCGCCAGTTGAATCATCTCCTTTATCTTTGTCTTTCAGgtgagattac ... ctgtgagcagTCCAATGCAGCAACACACAGTTGGACCTCCACAGTCGAGTGGCTTCACAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatccattaatgtgtaaacagatttgcctaatgagaaacatttactgtgagcagTCCAATGCAGCAACACACAGTTGGACCTCCACAGTCGAGTGGCTTCACAATGACATCATCAATGCAACCGAATATGTTGGACCGCCCGTGGATGGCCGTG
                          gcctaat  putative branch site (score: 3)
                                    aaacattta  TA-rich tract