1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaagaattatacttctttaggaaaacatttcacatacataagcactatacatttgtttaagctctcataaaaattcaacctcttagGTACTGTTACCTGTTGAACGATCTCACTCCCGATTTGCTGAAAAGCGAAGGATCAAGTTATGAAGGGTTGCAAGATTATCTCCGTGCCCGTGGCCGCGAT
species | Arabidopsis thaliana |
transcript | AT4G01800.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ACTCCAAAGGAAAGCTGGGATTTTGAAAAGCTCATTGCGAAAGTTCAGCA GTACTGTTACCTGTTGAACGATCTCACTCCCGATTTGCTGAAAAGCGAAGGEST: gi|125253581|gb|EL267666.1|EL267666
genomic: ACTCCAAAGGAAAGCTGGGATTTTGAAAAGCTCATTGCGAAAGTTCAGCAgtaagaatta ... aacctcttagGTACTGTTACCTGTTGAACGATCTCACTCCCGATTTGCTGAAAAGCGAAGG
EST: ACTCCAAAGGAAAGCTGGGATTTTGAAAAGCTCATTGCGAAAGTTCAGCA GTACTGTTACCTGTTGAACGATCTCACTCCCGATT
genomic: ACTCCAAAGGAAAGCTGGGATTTTGAAAAGCTCATTGCGAAAGTTCAGCAgtaagaatta ... aacctcttagGTACTGTTACCTGTTGAACGATCTCACTCCCGATT
acatacataagcactatacatttgtttaagctctcataaaaattcaacctcttagGTACTGTTACCTGTTGAACGATCTCACTCCCGATTTGCTGAAAAGCGAAGGATCAAGTTATGAAGGGTTGCAAGATTATCTCCGTGCCCGTGGCCGCGAT
cctctt CT-rich tract
tatacatttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaattatacttctttaggaaaacatttcacatacataagcactatacatttgtttaagctctcataaaaattcaacctcttagGTACTGTTACCTGTTGAACGATCTCACTCCCGATTTGCTGAAAAGCGAAGGATCAAGTTATGAAGGGTTGCAAGATTATCTCCGTGCCCGTGGCCGCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA