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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatttctctcaacctttcccttcagattgtttccacttctactagagagtttgctcatgtatactaattaagggtgattaatgaatcttgtagCTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAGTCAACAAACTCCAATCTTCATGGCTGAACCAATGCGTGCATCAAACTCAT

Basic information

species Arabidopsis thaliana
transcript AT3G45780.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45780.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 18
gtttgatttctctcaacctttcccttcagattgtttccacttctactagagagtttgctcatgtatactaattaag--ggtgattaatgaatcttgtagCTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAGTCAACAAACTCCAATCTTCATGGCTGAACCAATGCGTGCATCAAACTCAT------
        | || ||||  |    | |  |   ||     ||     ||||| ||   | || |    |||  ||   |||   |  ||    ||| |||| ||||| || | || | | || |      |||||| |||||| ||  ||||||| |  ||||| |||||||||||||| ||||| |||||||| ||||      
-------gtatcacaactatctattacccaagattaatttttggttcagagaattgaattatatcacataagcaaataggtatattgtgctcgttgcagCTTTTGATGCCAAATACAAATGAAA------AGAAAAGGCAACATAAAGGTCAACAGAACCCAATATTCATGGCTGAACCTATGCGAGCATCAAATTCATTCGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125259093|gb|EL273178.1|EL273178
EST:     TCTCTTTGTCGGATTTTGATCTGTCTTGCTTGACATCTTGCAAACCTCAG                         CTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAG
genomic: TCTCTTTGTCGGATTTTGATCTGTCTTGCTTGACATCTTGCAAACCTCAGgtttgatttc ... aatcttgtagCTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAG
EST: gi|124961235|gb|EL035789.1|EL035789
EST:     TCTCTTTGTCGGATTTTGATCTGTCTTGCTTGACATCTTGCAAACCTCAG                         CTGTTGATTCC
genomic: TCTCTTTGTCGGATTTTGATCTGTCTTGCTTGACATCTTGCAAACCTCAGgtttgatttc ... aatcttgtagCTGTTGATTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactagagagtttgctcatgtatactaattaagggtgattaatgaatcttgtagCTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAGTCAACAAACTCCAATCTTCATGGCTGAACCAATGCGTGCATCAAACTCAT
                  atgtatactaattaa  TA-rich tract