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gtaattgaaaatagttccacaagtctttagttgaggctcaactaaattacgactcgagaccgatttctaatatgatgaggcattatgtttcatagACATCGATGCACCAATCTCCCACCAGACATCTGACATTGATCAATCAAGCGTTGATACCTTACTCTCCTTTGGTTTTGCTGAAGATGTTGCTCGGAAGGC
species | Arabidopsis thaliana |
transcript | AT3G20630.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTCTCACATGGATGATCCAG ACATCGATGCACCAATCTCCCACCAGACATCTGACATTGATCAATCAAGCGEST: gi|125016632|gb|EL088901.1|EL088901
genomic: TTCTCACATGGATGATCCAGgtaattgaaa ... tgtttcatagACATCGATGCACCAATCTCCCACCAGACATCTGACATTGATCAATCAAGCG
EST: TGGGGTTGAAGAGGCAATGAACTGGTTACTTTCTCACATGGATGATCCAG ACATCGATGCACCAATCTCCCACCA
genomic: TGGGGTTGAAGAGGCAATGAACTGGTTACTTTCTCACATGGATGATCCAGgtaattgaaa ... tgtttcatagACATCGATGCACCAATCTCCCACCA
actaaattacgactcgagaccgatttctaatatgatgaggcattatgtttcatagACATCGATGCACCAATCTCCCACCAGACATCTGACATTGATCAATCAAGCGTTGATACCTTACTCTCCTTTGGTTTTGCTGAAGATGTTGCTCGGAAGGC
ttctaat putative branch site (score: 2)
atttctaatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgaaaatagttccacaagtctttagttgaggctcaactaaattacgactcgagaccgatttctaatatgatgaggcattatgtttcatagACATCGATGCACCAATCTCCCACCAGACATCTGACATTGATCAATCAAGCGTTGATACCTTACTCTCCTTTGGTTTTGCTGAAGATGTTGCTCGGAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG