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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccaaactgacttctatgatcaatgtctcttttttctatttgccattggaagtatgcaggagaactaacattatgttatgtgtcatgttttggacagATAAAGAGGATAAAAGAGAAATTCAGAGTGATGAATGAGAAGCTAAACTCTCATGAATTTGCTCAAAATCTAAAGGCTCCTTCGGTGCAGCATTGAGTGA

Basic information

species Arabidopsis thaliana
transcript AT3G19720.2
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164033278|gb|ES114342.1|ES114342
EST:     GGCAATCACTTGATCAAAAGAAACGGAGCACAGAGATCGAGCTCAGAAGG                         ATAAAGAGGATAAAAGAGAAATTCAGAGTGATGAATGAGAAGCTAAAC
genomic: GGCAATCACTTGATCAAAAGAAACGGAGCACAGAGATCGAGCTCAGAAGGgtaaaccaaa ... ttttggacagATAAAGAGGATAAAAGAGAAATTCAGAGTGATGAATGAGAAGCTAAAC
EST: gi|164119045|gb|ES158595.1|ES158595
EST:     GGCAATCACTTGATCAAAAGAAACGGAGCACAGAGATCGAGCTCAGAAGG                         ATAAAGAGGATAAAAGAAGAAATTACAGAGTGATGAATGAGAAGCTAAAC
genomic: GGCAATCACTTGATCAAAAGAAACGGAGCACAGAGATCGAGCTCAGAAGGgtaaaccaaa ... ttttggacagATAAAGAGGATAAAAGA-GAAATT-CAGAGTGATGAATGAGAAGCTAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattggaagtatgcaggagaactaacattatgttatgtgtcatgttttggacagATAAAGAGGATAAAAGAGAAATTCAGAGTGATGAATGAGAAGCTAAACTCTCATGAATTTGCTCAAAATCTAAAGGCTCCTTCGGTGCAGCATTGAGTGA
                    aactaac  putative branch site (score: 1)
                       taacattatgttat  TA-rich tract