Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagaaaaattattgaatttgtccttttgtcgttatttaaagttgcttttcatctgttatataagactcataattgttttttcccgttatcttgttgcagGCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAA

Basic information

species Arabidopsis thaliana
transcript AT3G17205.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G17205.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA17G04180.1 (Glycine max), 3'ss of exon 17
--------------------------------------------------------------ctagaaaaattattgaatttgtccttttgt----cgttatttaaagttgcttttcatctgtta-tataagactcataattgttt----------tttcccgttat--cttgt---tgcagGCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAA
                                                               | |||  | |||   |||    ||||| |    |||  ||| | || |  |     || ||  ||||   ||   | ||  ||          ||  | ||||   ||||    ||||||||||||||||||||||||| ||||||||||||||||| || |||||| | |||||| ||||||||||
gtatcccctctcctcctccattccctttttaatttctattttcctataaagtgggcctttgcattgaatgactatgctattctatcttttttgtcacgtggtttgaggtagtctgcatcctattcctatactgcttgcacttaattggaattttgcttcacagttactacttgcatgtgcagGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTTTTCTTGAGCAAATTGAAACAAAA

upper sequence: AT3G17205.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA07G36390.1 (Glycine max), 3'ss of exon 17
-------------------------------------------------------------------------------ctagaaaaattattgaatttgtccttttgtcgttatttaaagttg--------cttttcatctgttat---------ataagactcataattgttttttcccgttatcttgt---tgcagGCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAA
                                                                                |  |||   ||||  || | |  | |   |||  ||| |  | |        || ||| |||  |           ||  || |  |  ||    ||| |   |  ||||    ||||||||||||||||||||||||| ||||||||||||||||| || || ||| | |||||| ||||||||||
gtatcccctctcctccgcctttccctttctaatctcttttctaataaagtgggcctttgcattgaatgactgaatctacttcaaaatgctattctatcttttttgtca-cgtggtttgagttagtctgcatcctattcctctactgcttgcacttaattggaattttgcttcacatttactacttacttgcatgtgcagGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAA

upper sequence: AT3G17205.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 3'ss of exon 18
---ctagaaaaattattgaatttgtccttttgt---cgttatttaaagttgcttttcatctgttatataagactcataattgttttttcccgttatcttgttgcagGCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAA
    || ||   ||  ||  | |||   | |||      ||| | ||  |  |||| | ||   | || | |||  |  | |       | | | ||||  || |||| |||||||||||||||||||| ||||||||||||||||| || ||  | |||||| | ||||||||
gttttacaatgctttgtgtgtctgtgtgtgtgtgtgtactatctcaaact--tttttaacta--acattatact--ttgtggacgacatctgatttcttcctgtagGCCATGTTTGAAGGGATTCTTGTGGATATACCATTTGCAACATTCTTTTTGAGCAAATTAAAACAAAA

upper sequence: AT3G17205.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: EFJ20124 (Selaginella moellendorffii), 3'ss of exon 17
ctagaaaaattattgaatttgtccttttgtcgttatttaaagttgcttttcatctgttatataagactcataattgttttttcccgttatcttgttgcagGCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAA
                                                 | | ||   |||  |   |  || ||  |  ||  | ||  |     |||||| ||||||||||||||||| || || ||||| ||||| | |||||||||  | || ||||   | ||
------------------------------------------------gtgagcttgcataggaactttttatttcctcgttaacattcaccga--gcagGCAATGTTTGAAGGGATTCTCGTGGACATACCTTTTGCCATGTTTTTCCTGCGTAAGCTGAGGAAGAA

upper sequence: AT3G17205.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: EFJ14253 (Selaginella moellendorffii), 3'ss of exon 16
ctagaaaaattattgaatttgtccttttgtcgttatttaaagttgcttttcatctgttatataagactcataattgttttttcccgttatcttgttgcagGCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAA
                                                 | | ||   |||    |||  || ||  |  ||  | ||  |     |||||| ||||||||||||||||| || || ||||| ||||| | |||||||||  | || ||||   | ||
------------------------------------------------gtgagcttgcata-ggaacttttatttcctcgttaacattcaccga--gcagGCAATGTTTGAAGGGATTCTCGTGGACATACCTTTTGCCATGTTTTTCCTGCGTAAGCTGAGGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcatctgttatataagactcataattgttttttcccgttatcttgttgcagGCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAA
                               ttttttcccgttatct  CT-rich tract
                      tcataattgtttttt  TA-rich tract